Software Engineer

6 days left

Competitive Salary
27 Jul 2017
24 Aug 2017
Contract Type
Full Time
Software EngineerLocation:EMBL-EBI Hinxton near Cambridge, UK Staff Category:Staff Member
Contract Duration:3 years
Grading:6 (monthly salary starting at GBP2,855 after tax). For more information about pay and benefits click here
Closing Date:27th August 2017
Reference Number:EBI_01003
Job Description

We are seeking to recruit an enthusiastic, highly motivated Full-stack Software Engineer to work at the European Bioinformatics Institute (EMBL-EBI) located at the Wellcome Genome Campus near Cambridge in the UK.

You will be working in the highly dynamic Web Production Team led by Rodrigo Lopez, across a number of activities aimed at improving access to core services such as scientific text search, biological sequence analysis, improving access to collaboration platforms and web server provisioning for internal as well as external users and collaborators. You will be experienced with modern software development technologies and best practices and ideally be familiar with bioinformatics data and tools.

The Web Production team provides robust and reliable services to the community. You will be working with 11 highly skilled professionals that provide support to other teams and groups within the EMBL-EBI as well as a fast growing audience of scientists from around the world. You will be highly visible and participate regularly in internal and external events such as seminars, workshops and conferences at the international level. A proactive individual who learns new skills quickly would be ideal. Prior knowledge of bioinformatics tools and services is essential for this role.

At EMBL-EBI, we help scientists realise the potential of 'big data' in biology by enabling them to exploit complex information to make discoveries that benefit mankind. Working for EMBL-EBI gives you an opportunity to apply your skills and energy for the greater good. As part of the European Molecular Biology Laboratory (EMBL), we are a non-profit, intergovernmental organisation funded by 23 member states and two associate member states and proud to be an equal-opportunity employer. We are located on the Wellcome Genome Campus near Cambridge in the UK, and our 600 staff are engineers, technicians, scientists and other professionals from all over the world.

Qualifications and Experience

You will have a Master's or higher degree in computer science, software development or have equivalent experience and demonstrated experience in full-stack web applications development (i.e. back-end and front-end tiers, including web-based clients, programmatic access APIs, and data access layers). C, C++ and Java technologies and frameworks (e.g. Spring) are widely used within the organization, so experience with these is required as well as with CI/CD methodologies.

Prior work experience should include four or more years' software development in a team environment and supporting production systems in an academic or commercial setting. The ability to work within a team is critical to this position and excellent communication skills, verbal and written are essential. The software engineer will be required to communicate technical documents, take part in the daily Scrum, as well as provide user orientated communication with external and internal users of the systems. An ability to work to tight deadlines is essential, as are excellent English language skills and the ability to work with minimal direction when making technical decisions.


  • Masters or higher degree level or equivalent qualification/experience in computational, or related scientific discipline
  • At least 4 or more years' experience writing production quality software, ideally in an open development model setting
  • Prior knowledge and training with bioinformatics tools and services is essential
  • Expert knowledge of Java and Spring (MVC, Security, Integration), JavaScript/CoffeeScript and related technologies
  • You will be experienced in Web Services technologies (REST, SOAP, AWS, CWL, etc.) and API driven development and PaaS solutions
  • A good knowledge of modern front-end technologies such as AngularJS
  • Use of version control (e.g. Git, subversion) and notions of CI/CD methodologies
  • You will have experience using high performance computing frameworks such as Hadoop, Condor, Apache Spark or IBM/LSF.
  • Experience with running and troubleshooting web application servers (e.g. Java web containers such as Tomcat)
  • Experience in communicating and working with expert users (e.g. in a science community) in a co-development model


  • Previous experience evaluating open-source software and its subsequent integration to a production system
  • Familiarity with agile development practices and the full software development lifecycle in a team environment
  • Knowledge of scripting languages such as Perl/Python as well as Unix/Linux shells
  • Experience with VMs and/or container (Docker) deployment in public or private cloud environments
  • Experience of working within a dev/ops environment

You will be able to pay attention to detail but also meet deadlines. You will also demonstrate innovation and a willingness to take on new challenges and a passion for code development and making software that can be used. You have the knowledge and experience to make technical decisions with minimal supervision.


EMBL is an inclusive, equal opportunity employer offering attractive conditions and benefits appropriate to an international research organisation. The remuneration package comprises a competitive salary, a comprehensive pension scheme and health insurance, educational and other family related benefits where applicable, as well as financial support for relocation and installation.

We have an informal culture, international working environment and excellent professional development opportunities but one of the really amazing things about us is the concentration of technical and scientific expertise - something you probably won't find anywhere else.

If you've ever visited the campus you'll have experienced first-hand our friendly, collegial and supportive atmosphere, set in the beautiful Cambridgeshire countryside. Our staff also enjoy excellent sports facilities including a gym, a free shuttle bus, an on-site nursery, caf??s and restaurant and a library.

Application Instructions

To apply please submit a covering letter and CV, with two referees, through our online system.

Additional Information

Applications are welcome from all nationalities - visa information will be discussed in more depth with applicants selected for interview.

EMBL-EBI is committed to achieving gender balance and strongly encourages applications from women, who are currently under-represented at all levels. Appointment will be based on merit alone.

The initial contract is for a period of three years with the possibility of a fixed-term extension.

Applications will close at 23:00 GMT on the date listed above.

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